protein sequence for a particular mouse strain
1 answer
I found the source:
https://www.jax.org/strain/000550
See also this recent paper, it may be helpful:
http://biorxiv.org/content/biorxiv/early/2016/02/09/039131.full.pdf
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natasha.sernova
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A specific protein or the entire proteome?
a specific protein only
Unless you tell us which one we can't help.
MOLF bam files are available from Wellcome/Sanger center. I think these are aligned to black 6. You may be able to export the consensus in the region you are interested in and then translate to see if you get the protein sequence you need.