How to download SNP list of 1000 Genome
If I just want a list of the SNP ID(rsXXX) from 1000 Genome.
Is there a better way than downloading the full data and then extract the SNP IDs? ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/
Downloading is really slow
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1000 genomes
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