GO ID, is there a program to sort these into DAGs with classification?
I have a list of GO ID's I obtained from uniprot. I want to plot these in DAGs and from this, obtain the number of sequences with these GOs and their description under the 3 different classifications: MF, BP and CC.
I have a file with transcript name and the GO accession e.g GO:006543.Is there any software that will sort the GO's for me based on terms and levels, and provide me with a text file with the outputting results?
I have tried blast2go,successful for most of my sequences, but a lot of the GO's which have descriptions on uniprot and int he file I have show up weirdly as 'NA' in blast2go.
Thanks.
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Well, how many IDs are we talking about? There is a way to plot GO as a graph on EBI's OLS or in Quick go, however this is by using the homepage and not doing it 'via programming' - so I do not know about a software that does all that what you'd like to do the way you want to do it. Might have to do it yourself.