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Question: bigwig file in UCSC custom track
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Hi

I had a wiggle file in mm9 format. I converted it to bedgraph and using UCSC liftovered it to mm10. Then sort it and convert it to bigwig and put it in UCSC custom track. But something was changed. In wiggle format I could see the coverage by height but know all points within genome have same hight. How I could change it?

Thanks in advance

ADD COMMENTlink 3.8 years ago abc • 30 • updated 3.8 years ago Sukhdeep Singh 9.8k
1
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I think you loose this information while using liftOver. It would work fine with a bed file for example and then you can create a bedGraph and later wig or bigwig out of it.

You can try CrossMap so see if you retain it.

ADD COMMENTlink 3.8 years ago Sukhdeep Singh 9.8k
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Thanks a lot. It works

ADD REPLYlink 3.8 years ago
abc
• 30
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Great, you can mark the answer accepted then (Tick in the round box)

ADD REPLYlink 3.8 years ago
Sukhdeep Singh
9.8k

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