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Platanus error during assembly

Hi guys,

I am starting to use Platanus and it gives me this error

K = 16, saving kmers from reads... Error(5): Kmer distribution exception!! Kmer distribution cannot be caluculated proper.

Does anybody know what would it mean?

Best regards,

Carlos

assembly heterozygosity genome
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updated by hope • hope • written by Carlos • Carlos

Never used platanus but does the even kmer value causing the problem i.e. did you check with an odd kmer(k=17)?

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written by Rohit Rohit

Hello I also get the same error when used this Platanus software for my genome assembly. How do you solve this question?

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written by hope • hope

I also run into this problem. Did you solve it?

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written by bampress • bampress

1 answer

I guess this may be related to GCC. In my assembly, it reported this error in GCC4.47, but well run in GCC4.7, howerver, without the contig file. finally, I test it using a small data set, it runs without any problem. In conclusion, I did not finish my assmebly using this software.

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written by linansx037 • linansx037

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