gene list -interactions
hello all! I have only the set of up regulated (1526)and down regulated (1950) gene list of bladder cancer in excel. I want to see the interaction between these genes, Is there any tool or software to do this?
• 2,092 views
•
link
updated
by
Ram
•
written
by
priyasethu18 •
•
written
by
priyasethu18 •
3 answers
String can output the interactions based on your input.
• 1 views
•
link
written
by
Zhilong Jia
Dear priyasethu18, you could use netanalyst
It has various options for statistical analysis and finding functional module in your gene list, also you could attribute a weight for each gene in your network
Best
• 1 views
•
link
written
by
Shamim Sarhadi
Thank you! i tried using STRING , since my gene list is large the , output is taking long to display.
• 1 views
•
link
written
by
priyasethu18 •
Log in to answer this question.
More posts like this
-
Depending on which counts number, the genes are overexpressed either up or down regulated in GSEA ?
written by Amr •
-
Statistical test for overlap
written by pixie@bioinfo
-
filter before differential expression analysis
written by jonathanpa12 •
-
Pathway enrichment with differential expression p-values
written by DVA
-
Single-cell cluster : up- vs down-regulated marker genes
written by PR •
-
excel and most up/down regulated
written by candidatusae •
-
Gene set enrichment analysis
written by Shamim Sarhadi
-
Use cmap with rna-seq results
written by bioinformatics •
-
Blog: DAVID gene annotation functional classificaion an visualisation
written by rajasekargutha •
-
how to retrieve all proteins related to cancer
written by Learner
