450k CpG methylation to functional annotation
Hi,
I have a list of CpGs from Illumina 450k and I would like to map the individual probes (CpGs) to specific genes/promoters/enhancer regions. Is any way to do this is R?
Thank you in advance.
-bioklo
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s.w.vanderlaan •
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bioklo •
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bioklo •
1 answer
Can't you just use the annotation file from Illumina?
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s.w.vanderlaan •
I would just use the annotation files from Illumina, but there is also an annotation package in Bioconductor:
Please see this post:
How do I get gene annotation for probes on Illumina's HM450k arrays in FDb.InfiniumMethylation.hg19?
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Charles Warden
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