Score bit in multiple BLAST
Hi I want to blast two data-sets with each other. actually I want the bit score of pairwise blast of two data-sets. But I have a little information about its possibility and also the appropriate software for this job. Please help me.
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Chirag Nepal
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m.shahdoost •
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m.shahdoost •
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You can use BLAST (blastall -p blastn -i INPUTFASTA -d YOURDATASET -e EVALUECUTOFF -m 8) to get bit-score or e-value between two or more sequences. Using -m 8, gives the output in tabular matrix making it easier to parse. For more parameters, refer to the blast help options.
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