How to generate pair-wise alignments for all the orthologous gene pairs at once?
Hi everyone,
I want to calculate Ka/Ks value between two organism. For this I have to align pairwise each orthologs. I can align one pair at a time but I need to know how to align each pair at once. I have tabulated blast output which have the headers of each pair.
Please help me for this.
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kashiff007
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Please show an example of how your data look like.