This is a test version of Biostars. For the public version, visit https://www.biostars.org.
genbank file parsing

I have 73 genbank files and I need to extract all peptides along with locus tag as they contain multiple ORfs. I am new to programming. Can anyone let me know the procedure how to do this. I have used coderet module of emboss it gives peptide but not with locus tag. Can anyone help me out solving this problem.

sequence
• 5,739 views • link
updated by Jordan Anaya Jordan Anaya • written by sharmatina189059 • sharmatina189059

Hi Sharmantina, We can help you out with this and we would love have your data on our portal. Please let me know size of the data and how you like to use them. These information will help me to understand the level help you need.

Thanks, Sathik http://bioelm.com

• 0 views • link
written by support • support

moved to a comment as it is not an answer (ant it looks like a spam IMHO )

• 0 views • link
written by Pierre Lindenbaum Pierre Lindenbaum

Hi, This is not spam, We are building a platform and we also help the students and scholars to parse the data and host them for their research.

Thanks.

• 0 views • link
written by support • support

1 answer

I actually happen to have a youtube video and code for parsing genbank full files from NCBI:

Code is in Python and meant for nucleotides, but I'm sure it can be adapted for peptides.

• 0 views • link
written by Jordan Anaya Jordan Anaya

Log in to answer this question.

More posts like this