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genbank file parsing
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4.9 years ago
@sharmatina18905921479

I have 73 genbank files and I need to extract all peptides along with locus tag as they contain multiple ORfs. I am new to programming. Can anyone let me know the procedure how to do this. I have used coderet module of emboss it gives peptide but not with locus tag. Can anyone help me out solving this problem.

sequence • 1.4k views
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4.9 years ago
Jordan Anaya • 950
@Jordan Anaya24017

I actually happen to have a youtube video and code for parsing genbank full files from NCBI:

Code is in Python and meant for nucleotides, but I'm sure it can be adapted for peptides.

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