Question: genbank file parsing
Entering edit mode

I have 73 genbank files and I need to extract all peptides along with locus tag as they contain multiple ORfs. I am new to programming. Can anyone let me know the procedure how to do this. I have used coderet module of emboss it gives peptide but not with locus tag. Can anyone help me out solving this problem.

ADD COMMENTlink 3.9 years ago sharmatina189059 • 30 • updated 3.9 years ago Jordan Anaya • 950
Entering edit mode
Entering edit mode

I actually happen to have a youtube video and code for parsing genbank full files from NCBI:

Code is in Python and meant for nucleotides, but I'm sure it can be adapted for peptides.

ADD COMMENTlink 3.9 years ago Jordan Anaya • 950

Login before adding your answer.

Powered by the version 1.8