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Is there an equivalent of Biopython for Java?

I would like to know if there is something like Entrez from Biopython for Java. I would like to access databases like dbSNP to collect data from different variants.

java biopython python databases
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updated by Pierre Lindenbaum Pierre Lindenbaum • written by onemoreuser • onemoreuser

1 answer

Biojava : http://biojava.org/wiki/Main_Page

to access dbsnp by rs##, you can always use NCBI eutils.... How To Get A Dbsnp Data From Java?

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written by Pierre Lindenbaum Pierre Lindenbaum

I searched the Biojava page and the methods that I want to use are available in version 1.9 but I only find the .jar files for version 4.1.0.

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written by onemoreuser • onemoreuser

If I recall correctly, not everything has been ported from the "legacy" BioJava codebase - I'm sure help would be welcome.

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written by Peter Peter

I tried to use NCBI eUtils but I don't get any output with that.

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written by onemoreuser • onemoreuser

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