Hello, I'm using a pipeline that requires UCSC annotation downloaded from: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/ensGene.txt.gz I believe this is the format of the ensGene file: https://genome.ucsc.edu/cgi-bin/hgTables?db=danRer10&hgta_group=genes&hgta_track=ensGene&hgta_table=ensGene&hgta_doSchema=describe+table+schema UCSC does …

Hi All, I have been analysing some rat data with the default rn5 package and am now trying to upgrade to a more recent reference …

I started with PLINK data files, and changed the .map file over to the UCSC .bed format in order to do LiftOver. Now I have …

Seeking the most comprehensive database for the rat models (rn5) or a pipeline to generate a richer annotation for this organism.

Seeking a database of all possible predicted RNA in the entire mm9 genome. mfold will do this but has a 9000 base limit. I'm sure …

I have an old data from cufflinks, and this data is in the expr format. When searching the for the exprtogtc module that convert it …

I'm doing an RNA-seq study and am searching for FTP databases dedicated to viruses and cancer. However, if you know of other sites more broadly …

Hi, Is there a way to produce a .csv output from Blast2GO? I cannot find the option, all I can see is to output as …

Hi everyone, We did whole-genome sequencing of a disease-model rat. We mapped reads on Rat genome(rn5), and called variants(SNVs, indels, SVs). But we don't know …

<p>Hi all,</p> <p>I need to find gene names from some Rnor5.0 rat genome assembly locations. When I tried to download genes and their locations from …