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Graphic Of Genomic Positions Of Protein Domains

I know the part of this questions was solved in Biostar here

http://biostar.stackexchange.com/questions/3589/genomic-positions-of-protein-domains http://biostar.stackexchange.com/questions/6709/easy-way-to-map-cds-coordinates-to-genomic-coordinates

http://biostar.stackexchange.com/questions/15925/mapping-protein-domains-to-exons

What I need is to get some kind of graphic like this

http://www.nature.com/ng/journal/vaop/ncurrent/images_article/ng.1027-F3.jpg

Showing the exons, the domains and the CLUSTALW. Ok, probably I have to combine the CLUSTALw output with the other two graphics, any idea how to do it? Basically how to get the exon graphic

Thanks in advance

exon protein visualization clustalw
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updated by Zev.Kronenberg Zev.Kronenberg • written by Tonig Tonig

1 answer

TexShade will make nice alignments for these types of figures. Ultimately I think you will need to use illustrator or photoshop to combine the genomic plot and the alignment.

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written by Zev.Kronenberg Zev.Kronenberg

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