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Visualising Peaks Of Chip Seq Experiments On Different Chromosomes

Hi!

I need some help to visualise my peaks of three ChIP seq experiments on different chromosoms, something like this http://www.nature.com/nrendo/journal/vaop/ncurrent/fig_tab/nrendo.2011.245_F3.html (but instead of protein names the colour indiaction can be used as the presence of peak).

I have peaks for three factors which needs to be visualised in this manner.

Thank you.

chip-seq visualization
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updated by Sukhi Singh Sukhi Singh • written by Dataminer Dataminer

1 answer

Take a look at this and this, they talk about ideograms to plot the data in the form of chromosomes, this may help you.

Cheers

• 0 views • link
written by Sukhi Singh Sukhi Singh

Thanks Sukhdeep, I had to edit a bit and transform the python script in second link. It worked in the end. Great help. Thanks a lot mate. Tussi cha gaye

• 0 views • link
written by Dataminer Dataminer

I'm glad it worked, Dhanvaad :)

• 0 views • link
written by Sukhi Singh Sukhi Singh

Shukriya aapka sirji, Germany mein kaha hai? I am in Netherlands.

• 0 views • link
written by Dataminer Dataminer

Please drop me an email and we can talk there!!!!

• 0 views • link
written by Sukhi Singh Sukhi Singh

mine is abhisheksinghnl@gmail.com, I can't see your id on your profile.

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written by Dataminer Dataminer

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