Find telomeres and centromeres in de novo sequenced fungi
I assembled two fungi (Candida sp. and Metschinkowia sp.) from PacBio data.
I have a few contigs more than I expect. By finding the telomeres and centromeres I hope to get more insights how many chromosomes I realy have to expect. I was alredy able to find some of the telomeres by identifying repetitive structures at the ends of the contigs.
Nevertheless; Do you know tools to identify telomeres and/or centromeres in fungi/eukaryotes?
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Just check whether TelSeq tool helps. Also check recent article about Telomere length in different cancer samples.
For other organisms read this.
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Hi, did you find any answers to this? I'm wondering for very similar reasons :)
Nope, unfortunatelly not :-(