Separate curated and inferred interactions in CTD
Hi,
How can I separate the curated disease-gene interactions from inferred interactions in Gene-disease associations database file of CTD (Comparative Toxicogenomics Database)? (also in other databases file)
Thanks
ctd
comparative toxicogenomics database
• 1,839 views
•
link
updated
by
Biostar
•
written
by
mahdijalili •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Tool: ctdR: enrichment analysis of chemical–gene interactions from the Comparative Toxicogenomics D…
written by l.corsaro •Hi all, I'd like to share **ctdR**, an R package I've been developing to run enrichment analysis of **chemical–gene interactions** using data from the [Comparative …
-
Disease-Disease Association data
written by singhankit973 •I am working on a deep learning model for predicting disease gene associations, for that i am using disease-gene association data primarily and supplementing other …
-
How to choose databases to get protein protein interaction data
written by khsmkal •I have a set of genes associated with a particular complex disease. All the genes are in the HGNC gene symbol format. My aim is …
-
Extract cancer diseases by UMLS CUIs
written by mahdijalili •<p>Hi all,</p> <p>I want extract a subset of cancer diseases from a database which identified diseases by UMLS CUIs. How can I do this?</p> <p>Thanks.</p>
-
Forum: Database to find disease associated with chemicals
written by chitra.hari1987 •Hi I am looking for a database that accepts chemicals as input and throws out the diseases that are linked to it. I have found …
-
Database of genes with manually curated/fixed sequences?
written by Yannick WurmWhen working with gene sequences from an understudied species, it can be challenging to know whether the gene prediction model is correct. Methods for determining …
-
Finding the right GO annotation flat file for human build GCRh37
written by summerelaI found a download for the latest version of the GO annotation flat file [here][1]. But I'm also trying to locate a version that goes …
-
Genotator Or Comparative Toxicogenomics Database?
written by miquelduranfrigola<p>Hi all,</p> <p>I am looking for a comprehensive database of disease-related genes. I know <a href='http://genotator.hms.harvard.edu/geno/'>Genotator</a> and the <a href='http://ctd.org'>Comparative Toxicogenomics Database</a> (CTD) (resources like …
-
List Of Toxicity Databases Suitable For Bioinformatics And Chemoinformatics
written by miquelduranfrigola<p>Hi all,</p> <p>as an aside in my research, I'm facing the need to incorporate <strong>structural information</strong> of chemicals and their <strong>effects in humans</strong> in a …
-
Get Chemical Structures From Data In Comparative Toxicogenomics Database (Ctd)
written by miquelduranfrigola<p>The Comparative Toxicogenomics Database (CTD) has curated information on chemicals and its effects on human body. I'm very interested in the actual chemical structure of …