Hi, I want to download all the pathways involved in Neurodegenerative diseases from KEGG. How can I do it using the KEGG API? Thanks

Hi I am using RSEM (with bowtie2) for alignment then gene count. Using Refseq Annotation (gff3), and genomic.fna reference Fasta file from NCBI. RSEM can …

Hi All, I have RNA-Seq data on some cancer samples. I would like to cluster these samples based on the expression of a defined subset …

I want to analyze the flanking sequences around cancer variants. I have already downloaded cancer variants from COSMIC database. Now I am planning to extract …

Hi, How can I separate the **curated** disease-gene interactions from **inferred** interactions in Gene-disease associations database file of [CTD (Comparative Toxicogenomics Database)][1]? (also in other …

<p>I want to blast my circRNAs which are identified by CIRI software to circRNAs which in circBase database(<a href="http://www.circbase.org/" target="_blank">http://www.circbase.org/</a>). how can i find new …

<p>Hi everybody,</p> <p>I have 8 fasta files each containing 100 sequences and I want to extract those sequences that are present in all 8 files, …

<p>Hi!</p> <p>Is their a way to extract a list of genes present in a KEGG pathway.</p> <p>For instance if I want to extraxct list of …

<p>We have a list of a few thousand CNVs/SVs identified using array-based CNV calling methods. They are from five individuals sequenced by the 1000 Genomes …

<p>Hi All which is the best database choice from where i can extract a data set of causative variants and a data set of benign …