What is the approximate number of rare variants in specific length of chromosome which sequenced from NGS?

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8.3 years ago

stoghiani • 0

Dear all

I am considering to know approximate numbers of rare variants (MAF < 0.01-0.005) between specific length of chromosome such as bp, kbp or Mbp in human or cattle sequencing data via next generation sequencing. I will appreciate if anyone has a information or paper regarding to my question.

Regards
Sajjad

next-gen-sequencing • 1.3k views

ADD COMMENT • link updated 22 months ago by Ram 44k • written 8.3 years ago by stoghiani • 0

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I remember reading this in some of the 1000 genomes project papers. The papers can be found in http://www.1000genomes.org. BTW, I don't think you expect the same numbers for cattle and human. These things depend on the demographic history.

ADD REPLY • link updated 22 months ago by Ram 44k • written 8.3 years ago by abascalfederico ★ 1.2k

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