What is the approximate number of rare variants in specific length of chromosome which sequenced from NGS?
Dear all
I am considering to know approximate numbers of rare variants (MAF < 0.01-0.005) between specific length of chromosome such as bp, kbp or Mbp in human or cattle sequencing data via next generation sequencing. I will appreciate if anyone has a information or paper regarding to my question.
Regards
Sajjad
• 1,577 views
•
link
updated
by
Ram
•
written
by
stoghiani •
•
written
by
stoghiani •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Exome sequencing dataset for SKAT
written by aurina.arnatk •
-
Tool: TRcaller : a novel Tool for SSR /STR/TR genotyping from NGS data for short and long reads
written by Xuewen •
-
Blog: Next generation sequencing and its clinical applications
written by Novogene •
-
Job: Postdoctoral Fellow Pacific Northwest Research Institute (PNRI) in Seattle
written by Medhat
-
Ploidy for variant calling in tumor pooled samples for amplicon next-generation sequencing
written by Alexandre Eeckhoutte •
-
dbSNP annotation database and appropriate filtering in somatic variant calling pipelines
written by svlachavas
-
Whole Genome Sequencing and structural variation identification in human..
written by aneekbiotech •
-
About Accessible Genome Mask
written by SOHAIL
-
Blacklisted regions for hg38?
written by Endre Bakken Stovner
-
Number Of Snps By Maf
written by Genotepes
I remember reading this in some of the 1000 genomes project papers. The papers can be found in http://www.1000genomes.org. BTW, I don't think you expect the same numbers for cattle and human. These things depend on the demographic history.