How to do a count of SNPs per gene(set) from the plink.set.table output
How can I possibly do a count of the SNPs by set in the plink.set.table output? I have a long list of genes and an even longer list of SNPs that have been grouped into sets, the sets being the genes, in Plink giving the aforementioned output. The presence or absence of a SNP in a set is indicated by 1 or 0 respectively creating a kind of matrix. I would like to know the count of SNPs per gene (set)...something like what the summary() in R will give, I reckon. Help please.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Association between genetic mutation and other variables
written by InterestedInData •
-
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3…
written by keshav.prasad.gubbi •
-
Ranking bacterial genomes using present and absent genes information
written by Elendol •
-
Creating binary matrix of absence/presence of genes in multiple column lists
written by lmu •
-
How to export KEGG presence absence data from BRITE output?
written by samche42 •
-
Identifying consensus sequence between multiple Arabidopsis genome sequences
written by bioinforesearchquestions
-
Generating random sets of LD-independent SNPs from GWAS and calculating an empirical p-value
written by AB •
-
Display common genes in sets by a binary matrix
written by lessismore
-
how to BLAST search for known genes in local set of genomes?
written by jerrybug109 •
-
How to retrieve corresponding genes from a list of snps in preferably Plink...if possible
written by Avoks •
