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Tools For Major/Minor Allele Mining For A Given Snp

Hi,

I have a bunch of SNPs (50K) and I would like to assign for each of them (they are in rs id format) their corresponding Major and Minor allele as well as MAF is available.

Can anyone point me to the right tool to use or Database to query ?

Thanks for your help

Rad

snp
• 3,607 views • link
updated by Malachi Griffith Malachi Griffith • written by Radhouane Aniba Radhouane Aniba

Would need more info. Do you need the MAF in your data set. In another dataset ? In a database ? beware that allele frequencies can vary according to population. So it it in Europids ?

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written by Genotepes Genotepes

1 answer

This question is not entirely clear. You can readily get this kind of information from the UCSC genome table browser:

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Is that not the kind of thing you are talking about?

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written by Malachi Griffith Malachi Griffith

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