Scaffold making via scripting
Hi
My question today is for experts using python programming to do Bioinformatic analyses. I am trying to run a well written script for creating scaffold from my blast sequences. I am however getting the error again and again. I have pasted the error I am getting
Traceback (most recent call last):
File "C:/Python27/DB/Attempt3.py", line 150, in <module>
__main__()
File "C:/Python27/DB/Attempt3.py", line 143, in __main__
ContigsDict = myContigs (args.sequences)
File "C:/Python27/DB/Attempt3.py", line 49, in myContigs with open(file, "r") as f:
TypeError: coercing to Unicode: need string or buffer, NoneType found
Can somebody please advise me why I am getting his error.I know I have installed python and biopython as I am able to parse known sequences using this.
Regards
DV
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vidushipujni •
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I guess its nothing to do with bioinformatics and also a duplicate posted in stackoverflow. I am scared when I see
"C:/path"http://stackoverflow.com/questions/34926773/typeerror-coercing-to-unicode-need-string-or-buffer-nonetype-found-in-creatin
I think you'll find the solution on SO, also you should show the relevant part of the 'well written' script that throws the error.
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