TypeError: an integer is required (got type bytes)
I am trying to import hail and gnomad libraries but its showing me the error. Here is the code
from gnomad.resources.grch37 import gnomad
gnomad_v2_exomes = gnomad.public_release("exomes")
exomes_ht = gnomad_v2_exomes.ht()
exomes_ht.describe()
This is the error.
Traceback (most recent call last):
File "C:\....\PycharmProjects\Databases\exac.py", line 1, in <module>
from gnomad.resources.grch37 import gnomad
File "C:\....\PycharmProjects\Databases\venv\lib\site-packages\gnomad\resources\__init__.py", line 1, in <module>
from .resource_utils import *
File "C:\....\PycharmProjects\Databases\venv\lib\site-packages\gnomad\resources\resource_utils.py", line 3, in <module>
import hail as hl
File "C:\....\PycharmProjects\Databases\venv\lib\site-packages\hail\__init__.py", line 34, in <module>
from .table import Table, GroupedTable, asc, desc # noqa: E402
File "C:\....\PycharmProjects\Databases\venv\lib\site-packages\hail\table.py", line 4, in <module>
import pyspark
File "C:\....\PycharmProjects\Databases\venv\lib\site-packages\pyspark\__init__.py", line 51, in <module>
from pyspark.context import SparkContext
from pyspark import accumulators
File "C:\....\PycharmProjects\Databases\venv\lib\site-packages\pyspark\accumulators.py", line 97, in <module>
from pyspark.serializers import read_int, PickleSerializer
File "C:\....\PycharmProjects\Databases\venv\lib\site-packages\pyspark\serializers.py", line 71, in <module>
from pyspark import cloudpickle
File "C:\....\PycharmProjects\Databases\venv\lib\site-packages\pyspark\cloudpickle.py", line 145, in <module>
_cell_set_template_code = _make_cell_set_template_code()
File "C:\....\PycharmProjects\Databases\venv\lib\site-packages\pyspark\cloudpickle.py", line 126, in
_make_cell_set_template_code
return types.CodeType(
TypeError: an integer is required (got type bytes)
Process finished with exit code 1
How to fix it? I have tried to resolve it with different versions of pyspark but this error is not getting resolved anyway. I am using python version 3.9 on pycharm.
• 4,246 views
•
link
written
by
Bala Hatun •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
StreamModeError: Fasta files must be opened in text mode.
written by Robert •
-
ImportError: cannot import name 'ft2font' from partially initialized module 'matplotlib'
written by taniamahmood38 •
-
Metaphlan2
written by anjalivasudevan98 •
-
error related to vcfstats
written by rheab1230 •
-
Multiqc raises the "cannot import name 'gcd' from 'fractions'" error
written by sabbirakhand25 •
-
cannot import name 'gcd' from 'fractions'
written by h.gaikani •
-
Pybiomart quering Ensembl Variation 101
written by tomaszewskiolaf •
-
comlement fastq file using Biopython
written by Andrei Makhon •
-
Cannot install NumPy using pip and import it
written by Chvatil
-
Weird Numpy Error When I Try To Install Weblogo 3... Any Ideas?
written by margiezilla
You should add code, textual descritions alone are hard to debug.
Here is the code
And here is the error
A couple of points to note:
codeoption) to present your post better. You can use backticks for inline code (`text` becomestext), or select a chunk of text and use the highlighted button to format it as a code block. If your code has long lines with a single command, break those lines into multiple lines with proper escape sequences so they're easier to read and still run when copy-pasted. I've done it for you this time.