This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Are there any available genome data files in .AVRO format

Are there any human genome files available for download in .AVRO format?

I'm researching conversions utilizing .AVRO, such as .AVRO > .BAM or .FASTQ but so far haven't been able to find exome or WGS data in .AVRO format to work with.

avro

If you refer to Apache Avro then this data serialization system requires a schema. ADAM ( https://github.com/bigdatagenomics/adam ) , for instance, uses Apache Avro and according to the documentation you can use

adam-submit transform adam/NA12878.bam adam/NA12878.adam

for BAM conversion.

0 answers

No answers yet.

Log in to answer this question.