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Can I convert a .mol to a .pdb

I'm having trouble converting .mol to .pdb. I have .mol's of Trametinib and Dabrafenib and I wanna use the .pdb I have of MEK1 and MEK2 but when I try using BABEL to convert the .mol mMaya can't open the .pdb's I get. If anyone can help I would greatly appreciate it thanks!

trametinib .mol dabrafenib .pdb
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updated by Ram Ram • written by julius.godinez1987 • julius.godinez1987

Can you explain what do you mean by "can't open the .pdb's"?

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updated by Ram Ram • written by GouthamAtla GouthamAtla

mMaya won't open it I keep getting this message.

PDB "Dabrafenib_v3" failed to import correctly. You might try importing with different "import options" (removing bonds can often help). You may also attempt a coarse fix of the file. Many non-ProteinDataBank-derived structures have issues due to their incomplete adherence to the PDB specification. Feel free to send through feedback so we migth be able to help, preferably using the "updates / feedback" button at the bottom of the editor.

I've tried all of the options still won't open it

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updated by Ram Ram • written by julius.godinez1987 • julius.godinez1987

But did you inspect the file in a text editor what is missing or what mMaya is expecting?

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updated by Ram Ram • written by GouthamAtla GouthamAtla

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