Annotate Plink files with NCBI Human Reference Build 38 Fasta File
Hi,
I would like to ultimately create my own set-file to use with Plink to annotate some GWAS data that I have. I don't even know where to begin, what program to use. I have an annotation file from the NCBI, a .fa file. I have a GWAS file in bed/bim/fam binary format. Ultimately I want to make a set file for PLINK set-based tests. Any ideas? Thank you!
• 2,172 views
•
link
updated
by
Ram
•
written
by
laurenleesc •
•
written
by
laurenleesc •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
make BED file from existing BIM and FAM files
written by josephine.henry •
-
Subset binary files
written by yasaman •
-
Possible to merge three plink bim, bed and fam files?
written by salman_96 •
-
Plink: Number of Samples reducing after merging multiple bed,bim,fam files with Plink's --merge-lis…
written by Swetaleena •
-
SKAT O and IECAT
written by storm1907 •
-
How to create a Plink bfile BED from existing FAM and BIM files
written by huynguyen96.dnu •
-
GWAS Make bed file from fam and bim and Polygenic Risk Score calculation
written by landscape95
-
Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KING: How do conversi…
written by gaelgarcia
-
Creating Binary file (*.bed, *.bim, *.fam file) from 1000GP LEGEND file
written by tesfadej2003 •
-
plink mergelist put many individuals into same binary file set
written by gulcek •
