How to create a Plink bfile BED from existing FAM and BIM files
Hello,
Initially, I have had a vcf file, then used PLINK to turn it into three plink binary files (i.e., BIM, FAM, and BED).
Next, for FAM file, I only preserved samples of my interest using R (from 504 samples, now I just have 503 samples).
The same for BIM file, I only kept variant IDs of my interest using R too (from about 3 mil. IDs, now just have 18 IDs).'
Right now, I dunno how to have a new BED file accompanied with two new files FAM and BIM.
Please help me. Thanks in advance
• 1,514 views
•
link
written
by
huynguyen96.dnu •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Subset binary files
written by yasaman •
-
Merge only bim files with plink
written by mgdrnl •
-
SKAT O and IECAT
written by storm1907 •
-
Removing samples from FAM file using PLINK
written by fatma.mokhtar •
-
How to recode VCF from bed bim and fam files in plink with filter?
written by DN99 •
-
GWAS Make bed file from fam and bim and Polygenic Risk Score calculation
written by landscape95
-
Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KING: How do conversi…
written by gaelgarcia
-
Comparing Allele Frequency
written by sean •
-
Creating Binary file (*.bed, *.bim, *.fam file) from 1000GP LEGEND file
written by tesfadej2003 •
-
Bmerge Files In Plink
written by Zhshqzyc •
