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If today a new genome is solved how would you annotate it

If today a new genome is solved - how would you annotate it?

I need a short, concise answer.

gene genome
• 177 views • link
updated by Ram Ram • written by estybri • estybri

Hello estybri!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

P.S. We can't accommodate for the case that this is an (maybe slightly dull) exam question and you need a concise answer, there are already good answers on the topic and you can read them all to reach your own conclusions. Even if your exam was tomorrow 8a.m. you could make it. A good start is read the maker tutorial. This pipeline, together with the Ensembl pipeline, have emerged as quasi standard, so the theoretical way is equal to the practical way maker and ensembl do the annotation ;)

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written by Michael Dondrup Michael Dondrup

1 answer

If you are asking for a genome annotation pipeline you can try MAKER.

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updated by Ram Ram • written by trausch trausch

Thank you,

but I am not asking of how to do it in practice.

theoretically, if I am asked (in an exam) - what will be the answer?

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written by estybri • estybri

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