Hey everybody! I am performing ChIP-seq data analysis and I am currently in the process of generating .bigWig files using `bamCoverage`from the deepTools suite. I …

Hi, I have ChIP-seq data for different TFs and histone marks from rat cells and I would like to compare them to published data sets …

Hi All, I am looking for some insights for my question interest. I have Chip-Seq data for histone marks from 3 different subtypes of a …

Hi everyone, Maybe someone knows, is there any published and available Chip-seq data set with all confident bivalent regions (with H3K4me3 and H3K27me3 marks) in …

Dear all, I am looking for histone modifications (H3K4me1/me3, H3K27ac/me3) data during differentiation of embryonic stem cells (ESC) to some differentiated cells in human. Such …

Hi there, Can someone please point the URL from where processed long range interacting pairs, 4C/5C data from NIH roadmap epigenome data can be downloaded. …

**strong text**Hi there, I wanted to compile the list of URLs where processed sequencing data (RNA-seq, CAGE-seq, histone ChIP-seq and others) as available as custom …

Hi all, We have annotated the promoters of zebrafish miRNA primary (pri-miRNA) transcripts using CAGE-seq, histone ChIP-seq, RNAPII and RNA-seq. Annotated pri-miRNA promoters are good …

I am investigating a role of SNPs in DNase hypersensitive sites and in the DNA regions of histone marks and have some questions about it. …

Hi all, I am using varscan2 to identify SNPs in our data (exome study comparing normal/tumor from 5 patients). For testing I used only two …