TILLING population GWAS methodology
I have a TILLING population 1500 lines of a plant from EMS induced mutations with height phenotypes. I want to associate snps approx 6000 per line with the phenotype using some kind of GWAS study. I can produce a multi-vcf files of my sample but currently have the snps per sample in one file.
Does anyone know of a tool/package that can do this starting from a vcf file and tab file of line and height measurements?
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