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Hello everyone! I could not find the statistical test which is utilized by TASSEL when running mixed liner model to find SNP-phenotype association. Googling on …

Does anyone know a way to fix the bedGraphToBigWig error - end coordinate bigger than chr? My input is a bedGraph generated using MACS2. This …

I'm trying to calculate LD between loci on different chromosomes using plink on the 1000 genomes vcf data. I plan on following this thread to …

UPDATE : The question was initially "TPM Transcript per Million , gene / transcript length or both can be used ?" I change the title...because …

Hi all, I have structural calls represented in bedpe format http://bedtools.readthedocs.org/en/latest/content/general-usage.html#bedpe-format I want to merge the calls with both ends overlapping. similar to this question …

Hi all, I need your help. I have reads (fastq,pair-end) that have no reference genome. I want to use Discovar to assembly(no reference). I use …

The AMPLab at UC Berkeley is looking for senior software developers to work on their BigDataGenomics stack of tools (Apache Spark / SNAP / Adam …

I cannot find templates for `phenofile.txt` and `my.phenotype` in the following [PLINK/SEQ code][1]. Can anyone provide the link to the templates? For `phenofile.txt`, is it …

<p>I have a question regarding the kmer frequency distribution and Genome complexity.</p> <p>I have the kmer distribution numbers (from kmergenie) for a newly sequenced genome …