4.6 years ago
If you want an alternative for WEGO, PloGO is deserved to look into, I think. :)
It's an R package tool. Here's an introduction of the paper.
This R package contains tools for plotting gene ontology information
in a similar fashion to the WEGO web gene ontology plotting tool Ye et
al. (2006). However it was designed to incorporate information about
abundance in addition to the gene ontology annotation, as well as
handle multiple les and allow for a small selection of gene ontology
categories of interest.