GO enrichmenet analysis of non model organism using bingo
hello everyone
i am doing an experiment to get the microrna expression after infection of fish (olive flounder) with a bacteria and i got the target gene of microrna by predicting them. now i want to use bingo to do gene ontology enrichment analysis using bingo.
so i want to know the file format to input for the tool and how to make a custom reference to be used by the tool?
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EagleEye
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najibveto •
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najibveto •
2 answers
Bingo is a cytoscape plugin that can accept graphs or gene lists as input. Please read the docs and/or the tutorial. See also this blog post.
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Jean-Karim Heriche
A: GO enrichment analysis using a Text file with all the genes and GO ids associat
This might be useful
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I have the same problem too. BiNGO works great for model organisms with reference genomes, but is complicated for non-model organisms. Any comment of how you solved the problem of making a custom annotation file and how it worked?