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Bowtie query position

Hi,

is it possible to get not only the position of the reference strand but also of the query sequence? I know it is possible to "find" the sequence on the query but that's a not so nice solution...

Thanks

alignment
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updated by Ram Ram • written by ete ete

Can you rephrase the question ? Position of query sequence ?

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written by GouthamAtla GouthamAtla

1 answer

The query sequence is typically included in the SAM format, it's the 10th column.

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written by Devon Ryan Devon Ryan

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