Fastqc to BS-seq dataset (Methylation-seq quality control)

Hi Senior Methylators:

This figure is derived from fastqc analysis to a BS-seq fastq data.

However, Why the content of "G" is lowest rather than "C"?

OK. Maybe I get the idea: it is from Sample_2.fastq?

fastqc bs-seq

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updated 4.0 years ago by Ram

• written 10.7 years ago by Shicheng Guo

1 answer

Yup, you nailed it, it's because you're looking at sample #2, where you'll have a lack of Gs and an abundance of As.

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written 10.7 years ago by Devon Ryan

Thanks. I find it after I post it. Anyway, keep it. hope it can give some help to others.

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updated 6.7 years ago by Ram

• written 10.7 years ago by Shicheng Guo

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