R: How to show Correlation matrix as LD blocks similar as in haploview
R: How to show Correlation matrix as LD blocks similar as in haploview
Suppose we can a correlation matrix, sure, it is symmetric matrix and how can we show it as the LD block such as the output in haploview as the following:
Be careful, my input is a correlation matrix, not plink or any other snp dataset.
Still not good.
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Ram
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Shicheng Guo
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written
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Shicheng Guo
1 answer
Maybe:
would help.
In this vignette there is an alternative not so like haploview but maybe help:
http://www.bioconductor.org/packages/release/bioc/vignettes/trio/inst/doc/trio.pdf
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