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Determine which HUGO IDs are coding and non-coding

I have a giant list of HUGO identifiers. Is there any tool in Python or some web-server (preferably python) that could tell me if it's coding or non-coding?

gene blast rna-seq sequencing genome

2 answers

You could use the HGNC REST service. For example:

http://rest.genenames.org/fetch/symbol/ZNF3

Then parse for locus_type = "gene with protein product".

They also have a BioMart service.

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