Does RASA work for Gene Expression arrays?
Dear community,
Does anybody know if RASA works with Affy Gene expression arrays such as MoGene?
affy
rasa
gene expression arrays
• 1,742 views
•
link
updated
by
vassialk •
•
written
by
Juan Cordero
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Exclusion of miRNA microarray probes in PDX models
written by Juan CorderoHi, I would like to measure expression of miRNAs from (Affy) Clariom D arrays. cDNA comes from a PDX mouse model. Since extracting human genetic …
-
How to exclude probes from affy microarray before normalization?
written by Juan CorderoDear community, I have several Clariom D Human Arrays (Affymetrix) for which I want to remove some probes (the same set of probes in all …
-
how to exclude/include microarray chip based on pseudo-images?
written by Juan CorderoDear Biostars community, I have got some affy microarray data to analyse, and some chips display artifacts, according to their residual pseudo-images. However, I do …
-
background probes for MTA in RASA
written by Juan CorderoI need to make an analysis of expression of Mouse Transcriptome Arrays (MTA) from Affy. I've seen in the template for the "conf" file it …
-
Affy Mouse Transcriptome Array analysis with Bioconductor
written by Juan CorderoDear community, I am a newbie in Affy analysis with Bioconcuctor and, while 3'UTR arrays analysis results quite straightforward (normalisation, DE, enrichment analysis...), I am …
-
What to do with outliers from Microarray quality control?
written by Juan Cordero<p>Dear comm,</p> <p>I am new to Microarrays and I have just performed a quality control using arrayQualityMetrics from Bioconductor in a dataset of 18 samples …
-
Is it normal that my RNA degradation plot shows more degradation at the 3'-end?
written by Juan CorderoDear comm, I have made a RNA degradation plot with the function plotAffyRNAdeg from affy package (Bioconductor) and it seems RNA is more degraded at …
-
Convert AffyBatch object to ExpressionFeatureSet object
written by Juan CorderoDear comm, I am working with the library Affy from Bioconductor, and would like to make some calculations using the oligo library, but without having …
-
Parse RNA structure from Kinefold to RNA VIenna Package (RNAfold)
written by Juan Cordero<p>Hi dear community,</p> <p>I am using Kinefold software from the command line to get the folding prediction for a RNA molecule. I need to parse …
-
P-values distribution meaning
written by Juan CorderoHi dear community, Could anyone tell me what changes in the p-value distribution mean? I mean, for example, what does mean that the p-values follow …