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Existing Tools For Viewing A De Bruijn Graph From Raw Reads

I understand that there are plethora of tools available where you enter the read file and the software will internally build the De bruijn graph and will display the assembled genome.

I want to actually see the debruijn graph that has been constructed from the read file. Is there any tool available where you can actually view the graph from the raw-reads.

next-gen assembly genome
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updated by Ram Ram • written by kshitijtayal • kshitijtayal

1 answer

Have a look at Bandage.

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updated by Ram Ram • written by h.mon h.mon

Thank you for introducing me to this great tool. It would be of great help. However i have a doubt of mine that i would like to clarify . Bandage only supports loading assembled graph only. If i have a read file and want to view De briujn graph directly, it is impossible using Bandage. For bandage you should have a assembled graph. Correct me if i am wrong.

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written by kshitijtayal • kshitijtayal

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