how to find out genomic ranges in plant virus sequnces
How to detect genomic ranges from plant viral sequences (I did the analysis part with enough examples) but how to use the viral sequences / genome as input data
sequence
• 1,484 views
•
link
updated
by
Biostar
•
written
by
dksamuel2 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Regarding Barley genome
written by umeshtanwar2 •Hi all, I have recently started working with Barley (Hordeum vulgare) plant - Cultivar Golden Promise. I am interested in some genes and I got …
-
How to extract promoter sequences from a plant draft genome?
written by KumarI would like to extract promoter sequences from a draft plant genome. I found many web tools for the same, but those are accepting small …
-
How to use DRIMM-synteny ?
written by chengcheng •Hello, Does any one ever use DRIMM-synteny to detect the synteny blocks in multiple plant genomes? I download the program from http://bix.ucsd.edu/projects/drimm/, but there is …
-
Differences in the number of genotyping data for GWAS
written by rizky_dsatrio •If we want to do GWAS in agriculture, which is the better option among these cases: 1. I get 200 whole-genome data and also 200 …
-
Mauve Genome Alignment software
written by Rahul •Hello, I am using Mauve for computing genome alignment with help of reference plant genome,but I am not getting any results.Mauve console window only displaying …
-
Jellyfish-Kmer, Genome Size Estimation
written by jackuser1979<p>I have filtered paired-end genomic DNA sequence of non-model plant, sequenced through Hiseq 2000.Now I want to do k-mer analysis and want to estimate genome …
-
Genome Analysis
written by Zak •<p>Hello friends </p> <p>I am looking for some sort of protocol for genome analysis ,starting with assembly of contigs. i have a nucleotide sequencing data …
-
Detection Of Alternative Splicing And Gene Fusion Without Genome Info
written by Dejian<p>RNA-seq data can be used to detect alternative splicing and gene fusion, which will be relatively easy if genome sequences are available. What if the …
-
Circular Genome??
written by Bdv •<p>hi, we have sequenced a viral genome, and assembled it with 454 newbler. How can I know whether the genome is circular or linear? Should …
-
Merging And Binning Genomic Segments
written by Ryan D<p>I asked a form of this question previously here <a href='http://biostar.stackexchange.com/questions/3676/merging-genomic-segments-separated-by-some-distance-number-of-markers'>http://biostar.stackexchange.com/questions/3676/merging-genomic-segments-separated-by-some-distance-number-of-markers</a> but did not get much response.</p> <p>Given genomic regions (CNVs in my case) of …