Working with amplicon 16S Illumina and isolates strains · Biostar

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Working with amplicon 16S Illumina and isolates strains

Hi all!

I have sequences, 16S amplicon Illumina, from environmental samples and also I have sequences, 16S rRNA gene, from isolated strains from the same samples. I want to look for the singles isolates 16S in the amplicon sequences and know how much they match. Could you recommend me a software or tool that I can do it? Thank you for your time! Best Larisa

rna-seq blast alignment

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updated 3.9 years ago by Ram

• written 10.8 years ago by l.cortes.tolalpa •

1 answer

Look at VSEARCH, cd-hit or USEARCH.

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written 10.7 years ago by h.mon

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