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How to convert a bam file into tsv file format?

Hi everyone

I just want to convert a bam file into tsv (tab separated value) file format.

I new to bioinformatics.

bam
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updated by Ram Ram • written by malikbashirkhan2 • malikbashirkhan2

Please do not repost a closed question because you didn't like the comments you got.

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updated by Ram Ram • written by Michael Dondrup Michael Dondrup

Hello malikbashirkhan2!

We believe that this post does not fit the main topic of this site.

as I said... use samtools

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

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updated by Ram Ram • written by Michael Dondrup Michael Dondrup

1 answer

BED is tab-delimited. You could use bam2bed:

$ bam2bed < reads.bam > reads.bed
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updated by Ram Ram • written by Alex Reynolds Alex Reynolds

I have tried a lot but can't successful then I started to take help.

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updated by Ram Ram • written by malikbashirkhan2 • malikbashirkhan2

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