Fastx toolkits: Problems with fastq_quality_boxplot_graph.sh

Hello All,

I'm trying to run the follow command from fastx toolkits in my mac ox s 10.10.4:

$ fastq_quality_boxplot_graph.sh -i statR1 -o plotR1 -t Forward sequence

where -i statR1 is the output from the fastx_quality_stats command and this is the error I get:

/usr/local/bin/fastq_quality_boxplot_graph.sh: line 162: gnuplot: command not found

I checked for the command and it is on the write place and the 162 line says: echo "$GNUPLOTCMD" | gnuplot > "$OUTPUTFILE"

I installed gnuplot as recommended at http://hallora.tistory.com/entry/FastX-toolkit-local-install but I still get the same message.

Any idea what is happening?

Thank you to all!

Daniela

fastx boxplot

• 3,612 views • link

updated 3.9 years ago by Ram

• written 10.9 years ago by DVR •

Is gnuplot in your PATH?

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written 10.9 years ago by Devon Ryan

In other words, what happens if you simply type gnuplot on the command line?

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written 10.9 years ago by Dan D

1 answer

Thank you Ryan and Dan, I actually did not have gnuplot. I already installed it.

Thanks.

• 0 views • link

written 10.8 years ago by DVR •

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