I tried to download original Affymetrix SNP 6.0 data for use in "HAPSEG" and "ABSOULUTE". However, after setting the platform as "Affymetrix SNP 6.0," only …

hi guys, Could anyone guide me on how to get clinical drug response data from TCGA ? I have access to the broad GDAC firehose …

Hi everyone, I would like to get snp level 2 data (https://wiki.nci.nih.gov/display/TCGA/SNP+array-based+data) from TCGA (breast cancer). Unfortunately, TCGA site is down for maintenance, and the …

Hi All, I was trying to get WGS MAF files from TCGA. I was going through this wonderful post here at https://www.biostars.org/p/69222/ and it looks …

Hi I want a consolidated MAF file for all cancers from TCGA data. Is it correct to use the MAF search tool: https://tcga-data.nci.nih.gov/search/#/ Click all …

I am currently working with Level 1-3 TCGA data. I'm trying to redo the Copy Number Variation analysis that they did, getting a report of …

I am doing an analysis of TCGA's CNV data. I'd like more information about the probe density on each chromosome of the Affy 6.0 array …

<p>Hello all,</p> <p>I am still trying to find a place where I can download z-scores for the TCGA RNAseq data.</p> <p>I have found two mentions …

<p>Hi, guys,</p> <p>I am trying to use TCGA SNP Level 2 data. However, I found the available files including more samples provided in data matrix. …

<p>Dear all,</p> <p>First time to touch SNP array. I have a set of SNP array downloaded from TCGA. Now I am interested in the SNP …