How to find annotation file version from CDF file
Hello,
I have some .CEL files that were profiled on Affymetrix Human Genome Wide SNP 6.0 array. This was done a while back by some one else, I am trying to back track and find out what annotation file version was used.
There is a CDF File called GenomeWideSNP_6.Full.cdf. Is there a way to find out which version of annotation this CDF file contains?
I tried to read in the CDF into R (using the affxparser) but it crashes every time.
I also tried reading in the header of the CDF file, but that did not have any version information.
Any help on this will be useful.
Thanks!
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The CDF file is (probably) in binary. To read the CDF header, try this:
strings < GenomeWideSNP_6.Full.cdf > GenomeWideSNP_6.Full.txt
head GenomeWideSNP_6.Full.txt
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