Visualize the two pathways sharing some common genes
How to get a figure of two pathways where there are some common shared genes? Any website or R package suggestion? Thank you.
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It is quite easy. First you need get the structure for each pathway,
For example, for the first pathway
A - B
B - C
A - C
And then, for the second pathway
A - F
E - M
T - H
M- H
Then you can merge these two pathway and import them to Cytoscape, then you will get the merge pathway.
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Our regulatory network browser might offer some guidance on how to do this via a d3.js-based website. Otherwise, you could try rendering a couple networks in Cytoscape and pull exported figures together in Adobe Illustrator or Inkscape.
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