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What tools can use to find RNA modification sites?

Hi I'm trying to predict modified ribonucleotides sites under stress condition bioinformaticly and I don't know what tool could I use. Any suggestion.

rna-seq snp
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updated by Ram Ram • written by guillermofernandeznegrete • guillermofernandeznegrete

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You can use RMBase to find RNA modification sites identified from 404 transcriptome sequencing datasets (Pseudo-seq, Ψ-seq, CeU-seq, Aza-IP, MeRIP-seq, m6A-seq, miCLIP, m6A-CLIP, RiboMeth-seq). It contains more than 100 modification types, such as m6A, m5C, 2'-O-Me and pseudouridine etc.

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updated by Ram Ram • written by lsp03yjh lsp03yjh

thanks it's a good approximation and useful in mm10 that I'm studying, but I'm looking for something more specific, maybe a software that find this specific modification sites. Now I'm find a software names HAMR (high trhoughput....) that find modified nucleotides.

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updated by Ram Ram • written by gufernandez10 • gufernandez10

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