Hi all, This is my first time trying to understand and visualize a VCF file on IGV, I make my vcf as follows: samtools mpileup …

Recently, I used XHMM to call CNV based on WES data. All the parameters were set to as the same as the XHMM workflow showed …

Hi all, I get the following error when reading the sample.bam. The file was converted from sam to bam using the following command: samtools view …

Hi! I'm trying to use XHMM for CNV detection but I have a few problems: 1) I'm following this quide [url]http://atgu.mgh.harvard.edu/xhmm/tutorial.shtml[/url] for the use and …

Hi all I do rna-seq , after tophat mapping, I got 6 aligned.bam file . And I played them by Cuffdiff, it works. However, if …

Hi all, To identify exonic deletions from exome sequencing data I want to use [XHMM][1]. However doing it genome wide will take long since I …

Hi all, I checked some CNV analysis software including cnvnator, cnvseq, xhmm, cnvkit, exomeCNV etc. Many or most of them needs sample number exceed 20 …

Hi all, Recently, I installed and tried several different software for CNV detection. However, I found that many of them use HMM algorithm, since you …

Hi all， My data is two samples: tumor and normal, exome and whole genome sequencing data. I have tried XHMM for CNV analysis, but it …

Hi all, I use two bam file to find CNV, the software is XHMM, but the result .xcnv is always empty. However the example have …