This is a test version of Biostars. For the public version, visit https://www.biostars.org.
dbsnp for rat

Hi,

I need to download dpsnp of rat. I used dbsnp ftp site and found under organisms there are two data sets for rat rat_10116 and rat_10118 Are they different strains??

Moreover, dpsnp vcf files for rat has SAO which is defined as follows:

##INFO=<ID=SAO,Number=1,Type=Integer,Description="Variant Allele Origin: 0 - unspecified, 1 - Germline, 2 - Somatic, 3 - Both">

For snps with SAO=0, is there any possibility that they are somatic variants?

Thank you in advance

snp

Hello Rna-Seq!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

PS: exact duplicate

0 answers

No answers yet.

Log in to answer this question.