What galaxy tool should I use to compare these regions?

What galaxy tool should I use to compare CTSS (CAGE-detected transcription start sites) regions with rRNA?

transcription rrna galaxy tss cage

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updated 3.9 years ago by Ram

• written 11.0 years ago by espop23

Maybe you can get an answer using the biostar forum for galaxy. Personally, I do not know how to use galaxy.

https://biostar.usegalaxy.org/

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written 11.0 years ago by tiago211287

CAGE with rRNA?

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updated 6.7 years ago by Ram

• written 11.0 years ago by GouthamAtla

Transcription start sites detected with CAGE, and rRNA

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updated 3.9 years ago by Ram

• written 11.0 years ago by espop23

I think the best tools is bedtools intersect. For example:

bedtools intersect -wa -u -a your_ctss_bed_file -b rRNA_bed_file

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updated 3.9 years ago by Ram

• written 11.0 years ago by Shicheng Guo

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